| Please Leave a Message: Anthology Film Archives Voicemails Through the Ages (2022) |
| Diaries, Notes, and Sketches (2013) Self |
| Free Radicals: A History of Experimental Film (2011) Himself |
| For Stan (2009) Himself |
| A Visit to Stan Brakhage (2006) |
| Brakhage Crosses Central Park (2006) Self |
| Notes on Marie Menken (2006) Self (archive footage) |
| A Visit to Stan Brakhage (2003) Himself |
| Sonic Youth: Koncertas Stan Brakhage Prisiminimui (April 12, 2003) (2003) Self (archive footage) |
| Keeping an Eye on Stan (2003) |
| Encomium (2003) Self |
| Life with Stan #4: Stan Painting (2002) |
| Stan Brakhage Exits the Cinema and Enters the Light of Day (2002) Himself |
| Im Spiegel der Maya Deren (2002) Himself |
| Vakvagany (2002) Himself |
| Garden Path (2001) |
| As I Was Moving Ahead, Occasionally I Saw Brief Glimpses of Beauty (2000) Self |
| Looking at Forest of Bliss (2000) Himself |
| Keepers of the Frame (1999) Himself |
| Brakhage (1998) Self |
| I Met Stan Brakhage (At Moma, N.Y.C) (1998) |
| Birth of a Nation (1997) Self |
| Stan Brakhage on Gregory Markopoulos (1997) |
| Stan Brakhage on Jim Davis (1997) |
| Cannibal! The Musical (1996) Noon Sr. |
| BRAKHAGE ON BRAKHAGE (1996) self |
| As Is Was (1995) |
| Jonas in the Desert (1994) Self |
| Abstract Cinema (1993) Himself |
| Z (Zee Not Zed) (1993) |
| Joseph Cornell: Worlds in a Box (1991) Self |
| Watunna (1989) Narrator |
| I... Dreaming (1988) |
| Faust's Other: An Idyll (1988) |
| Doodlin': Impressions Of Len Lye (1987) Self |
| Invocation: Maya Deren (1986) Himself |
| Reflecting Thought: Stan Brakhage (1985) Self |
| Tortured Dust (1984) |
| Stan & Jane Brakhage (1981) Self |
| Grand Opera: An Historical Romance (1978) Himself (voice) |
| The Stars Are Beautiful (1974) Narrator (voice) |
| Reality's Invisible (1972) Himself |
| Filmmakers (1969) Himself |
| The Art of Vision (1965) Man |
| Dog Star Man (1965) |
| Dog Star Man: Part III (1964) |
| Dog Star Man: Part IV (1964) |
| Song 1 (1964) |
| Dog Star Man: Part I (1963) |
| Dog Star Man: Part II (1963) |
| Prelude: Dog Star Man (1962) |
| Window Water Baby Moving (1959) Self (uncredited) |
| Wedlock House: An Intercourse (1959) |
| Cat's Cradle (1959) Self |
| Flesh of Morning (1956) |
| Trumpit (1956) |
| The One Romantic Venture of Edward (1956) |
| The Extraordinary Child (1954) |