| Please Leave a Message: Anthology Film Archives Voicemails Through the Ages (2022) |
| Fragments of Paradise (2022) Self |
| Reminiscences of Jonas Mekas (2016) |
| Diaries, Notes, and Sketches (2013) Self |
| What Is Cinema? (2013) Self |
| Emma's Dilemma (2012) Himself |
| Sleepless Nights Stories (2011) Self |
| Free Radicals: A History of Experimental Film (2011) Himself |
| Correspondencia Jonas Mekas - J.L. Guerin (2011) Himself |
| Santos Dumont: Pré-Cineasta? (2010) Himself |
| Lavender (2010) Self |
| Momma's Man (2008) Dad |
| 365 Day Project (2007) |
| Jack Smith and the Destruction of Atlantis (2007) Self |
| Star Spangled to Death (2004) Oscar Friendly / Ringmaster / Janitor |
| Shorts From the Underground (2002) himself |
| As I Was Moving Ahead, Occasionally I Saw Brief Glimpses of Beauty (2000) Self |
| Birth of a Nation (1997) Self |
| Jonas in the Desert (1994) Self |
| Quartet Number One (1991) |
| He Stands in a Desert Counting the Seconds of His Life (1986) Self (archive footage) |
| Home Movies 1971-81 (1985) |
| Lost, Lost, Lost (1976) Self |
| Huge Pupils (1968) Himself |
| Bill's Hat (1967) |
| Blonde Cobra (1963) |
| Scotch Tape (1962) |